Scientific Skills

Claude Scientific Skills

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A comprehensive collection of 125+ ready-to-use scientific skills for Claude, created by the K-Dense team. Transform Claude into your AI research assistant capable of executing complex multi-step scientific workflows across biology, chemistry, medicine, and beyond.

These skills enable Claude to seamlessly work with specialized scientific libraries, databases, and tools across multiple scientific domains:

• 🧬 Bioinformatics & Genomics - Sequence analysis, single-cell RNA-seq, gene regulatory networks, variant annotation, phylogenetic analysis
• 🧪 Cheminformatics & Drug Discovery - Molecular property prediction, virtual screening, ADMET analysis, molecular docking, lead optimization
• 🔬 Proteomics & Mass Spectrometry - LC-MS/MS processing, peptide identification, spectral matching, protein quantification
• 🏥 Clinical Research & Precision Medicine - Clinical trials, pharmacogenomics, variant interpretation, drug safety, precision therapeutics
• 🧠 Healthcare AI & Clinical ML - EHR analysis, physiological signal processing, medical imaging, clinical prediction models
• 🖼️ Medical Imaging & Digital Pathology - DICOM processing, whole slide image analysis, computational pathology, radiology workflows
• 🤖 Machine Learning & AI - Deep learning, reinforcement learning, time series analysis, model interpretability, Bayesian methods
• 🔮 Materials Science & Chemistry - Crystal structure analysis, phase diagrams, metabolic modeling, computational chemistry
• 🌌 Physics & Astronomy - Astronomical data analysis, coordinate transformations, cosmological calculations, symbolic mathematics, physics computations
• ⚙️ Engineering & Simulation - Discrete-event simulation, multi-objective optimization, metabolic engineering, systems modeling, process optimization
• 📊 Data Analysis & Visualization - Statistical analysis, network analysis, time series, publication-quality figures, large-scale data processing
• 🧪 Laboratory Automation - Liquid handling protocols, lab equipment control, workflow automation, LIMS integration
• 📚 Scientific Communication - Literature review, peer review, scientific writing, document processing, publication workflows
• 🔬 Multi-omics & Systems Biology - Multi-modal data integration, pathway analysis, network biology, systems-level insights
• 🧬 Protein Engineering & Design - Protein language models, structure prediction, sequence design, function annotation

Transform Claude Code into an 'AI Scientist' on your desktop!

⭐ If you find this repository useful, please consider giving it a star! It helps others discover these tools and encourages us to continue maintaining and expanding this collection.

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📦 What's Included

This repository provides 125+ scientific skills organized into the following categories:

• 26+ Scientific Databases - Direct API access to OpenAlex, PubMed, ChEMBL, UniProt, COSMIC, ClinicalTrials.gov, and more
• 54+ Python Packages - RDKit, Scanpy, PyTorch Lightning, scikit-learn, BioPython, PennyLane, Qiskit, and others
• 15+ Scientific Integrations - Benchling, DNAnexus, LatchBio, OMERO, Protocols.io, and more
• 20+ Analysis & Communication Tools - Literature review, scientific writing, peer review, document processing

Each skill includes:

• ✅ Comprehensive documentation (

  SKILL.md

  )
• ✅ Practical code examples
• ✅ Use cases and best practices
• ✅ Integration guides
• ✅ Reference materials

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📋 Table of Contents

• What's Included
• Why Use This?
• Getting Started
  • Claude Code
  • Cursor IDE
  • Any MCP Client
• Prerequisites
• Quick Examples
• Use Cases
• Available Skills
• Contributing
• Troubleshooting
• FAQ
• Support
• Join Our Community
• Citation
• License

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🚀 Why Use This?

⚡ Accelerate Your Research

• Save Days of Work - Skip API documentation research and integration setup
• Production-Ready Code - Tested, validated examples following scientific best practices
• Multi-Step Workflows - Execute complex pipelines with a single prompt

🎯 Comprehensive Coverage

• 125+ Skills - Extensive coverage across all major scientific domains
• 26+ Databases - Direct access to OpenAlex, PubMed, ChEMBL, UniProt, COSMIC, and more
• 54+ Python Packages - RDKit, Scanpy, PyTorch Lightning, scikit-learn, PennyLane, Qiskit, and others

🔧 **Easy Inte