K-Dense Scientific Skills — 13C Metabolic Flux

Name: K-Dense Scientific Skills — 13C Metabolic Flux
Availability: InStock
Author: K-Dense-AI

Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps, mfapy isotope simulation, constrained multistart fitting, and flux-profile

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Last updated: October 22, 2026

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Install Command

npx skills add K-Dense-AI/scientific-agent-skills --skill 13c-metabolic-flux

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Carbon-13 metabolic flux inference

Turn reviewed carbon maps, explicit tracer mixtures, and corrected labeling measurements into feasible flux estimates and evidence about which fluxes the experiment constrains. Use the bundled solver rather than reconstructing isotope balances or fitting each reaction independently. It runs mfapy's EMU forward simulator and fits fluxes in the mass-balanced feasible space with SciPy. It does not use an FBA objective.

Scope and required evidence

This implementation supports metabolic and isotopic steady state, a single shared flux state across one

Install

npx skills add K-Dense-AI/scientific-agent-skills --skill 13c-metabolic-flux

Or copy the skill folder manually:

git clone https://github.com/K-Dense-AI/scientific-agent-skills.git
cp -r scientific-agent-skills/skills/13c-metabolic-flux/ ~/.claude/skills/13c-metabolic-flux

Source: K-Dense-AI/scientific-agent-skills — 53,758 stars, MIT, verified 2026-10-22.

K-Dense Scientific Skills — 13C Metabolic Flux

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Install Command

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K-Dense Scientific Skills — Adaptyv

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Carbon-13 metabolic flux inference

Scope and required evidence

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K-Dense Scientific Skills — Aeon

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