name: cellxgene-census description: "Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis."

CZ CELLxGENE Census

Overview

The CZ CELLxGENE Census provides programmatic access to a comprehensive, versioned collection of standardized single-cell genomics data from CZ CELLxGENE Discover. This skill enables efficient querying and analysis of millions of cells across thousands of datasets.

The Census includes:

61+ million cells from human and mouse
Standardized metadata (cell types, tissues, diseases, donors)
Raw gene expression matrices
Pre-calculated embeddings and statistics
Integration with PyTorch, scanpy, and other analysis tools

When to Use This Skill

This skill should be used when:

Querying single-cell expression data by cell type, tissue, or disease
Exploring available single-cell datasets and metadata
Tra

CZ CELLxGENE Census

AI Skill Market Insights

Quick Start

Manual Installation

TEAR & SHARE

AlphaFold Database

Be Part of the 2,391+ Developer Community

name: cellxgene-census description: "Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis."

CZ CELLxGENE Census

Overview

When to Use This Skill

Astropy

Adaptyv

Arboreto

Biomni

Products

Resources

Company