Biopython: Computational Molecular Biology in Python

Name: Biopython: Computational Molecular Biology in Python
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Author: K-Dense-AI

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name: biopython description: "Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database."

Biopython: Computational Molecular Biology in Python

Overview

Biopython is a comprehensive set of freely available Python tools for biological computation. It provides functionality for sequence manipulation, file I/O, database access, structural bioinformatics, phylogenetics, and many other bioinformatics tasks. The current version is Biopython 1.85 (released January 2025), which supports Python 3 and requires NumPy.

When to Use This Skill

Use this skill when:

Working with biological sequences (DNA, RNA, or protein)
Reading, writing, or converting biological file formats (FASTA, GenBank, FASTQ, PDB, mmCIF, etc.)
Accessing NCBI databa

Biopython: Computational Molecular Biology in Python

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Biopython: Computational Molecular Biology in Python

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